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ysdC [2019-06-27 12:08:36]

similar to endo-1,4-beta-glucanase

locus

BSU28820

5.55

39.06 kDa

protein length

361 aa Sequence Blast

gene length

1086 bp Sequence Blast

function

unknown

product

unknown

essential

synonyms

Outlinks

KEGG BsubCyc SubtiList UniProt Expression Browser

Genomic Context

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categories

[category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.27|Utilization of other polymeric carbohydrates]

Gene

Coordinates

2,950,221 → 2,951,306

The protein

Protein family

Peptidase M42 family (with [protein|search|YsdC ]and [protein|16585F4118F3D2732D6780D351B7AA5F6DDCCEB8|YtoP], according to UniProt)

Paralogous protein(s)

[protein|16585F4118F3D2732D6780D351B7AA5F6DDCCEB8|YtoP]

Structure

[PDB|1VHE]

[SW|Localization]

secreted (according to Swiss-Prot)

additional information

belongs to the 100 [SW|most abundant proteins] [PubMed|15378759]

Expression and Regulation

Operons

genes

[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]

description

[Pubmed|22383849]

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Biological materials

Mutant

MGNA-A999 (ysdC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/999 NBRP B. subtilis, Japan]

BKE28820 (Δ[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCAAACCCTCCTTC, downstream forward: _UP4_TAAAGATACGGAAGAATCCG

BKK28820 (Δ[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCAAACCCTCCTTC, downstream forward: _UP4_TAAAGATACGGAAGAATCCG

References

15378759